Stone tools may hint at ancestors of Homo floresiensis

Some stone tools found near a river on the Indonesian island of Sulawesi suggest that the first hominins had reached the islands by at least 1.04 million years ago. That’s around the same time that the ancestors of the infamously diminutive “Hobbits” may have reached the island of Flores.

Archaeologist Budianto Hakim of Indonesia’s National Research and Innovation Agency and his colleagues were the ones who recently unearthed the tools from a site on Sulawesi. Although a handful of stone flakes from that island don’t tell us who the ancestors of the small species were or how they reached remote islands like Flores and Luzon, the tools are one more piece in the puzzle. And this handful of stone flakes may eventually play a role in helping us understand how other hominin species conquered most of the world long before we came along. 

Crossing the ocean a million years ago

Sometimes the deep past leaves the smallest traces. At the Calio site, a sandstone outcrop in what’s now a cornfield outside the village of Ujung in southern Sulawesi, people left behind just a handful of sharp stone flakes roughly a million years ago. There are seven of them, ranging from 22 to 60 millimeters long, and they’re scratched, worn, and chipped from tumbling around at the bottom of a river. But it’s still clear that they were once shaped by skilled human—or at least human-like—hands that used hard stones as hammers to make sharp-edged chert flakes for cutting and scraping.

The oldest of these tools is likely to be between 1.04 and 1.48 million years old. Hakim and his colleagues dated teeth from a wild pig to around 1.26 million years ago. They were part of a jawbone archaeologists unearthed from a layer just above the oldest flake. Throw in some statistical modeling, and you get the range of likely dates for the stone flake buried in the deepest layer of soil.

Even the younger end of that estimate would make these tools the oldest evidence yet of hominins (of any species) in the islands of Indonesia and the Philippines. This area, sometimes called Wallacea, lies between the continents of Asia and Australia, separated from both by wide channels of deep ocean.

“But the Calio site has yet to yield any hominin fossils,” said Brumm, “so while we now know there were tool-makers on Sulawesi a million years ago, their identity remains a mystery.” But they may be related to the Hobbits, a short-statured group of hominins who lived hundreds of kilometers away on the island of Flores until around 50,000 years ago.

“The discovery of Early Pleistocene artifacts at Calio suggests that Sulawesi was populated by hominins at around the same time as Flores, if not earlier,” wrote Hakim and his colleagues in their recent paper. 

The Flores connection

The islands that now make up Indonesia and the Philippines have been a hominin hotspot for at least a million years. Our species wandered onto the scene sometime between 63,000 and 73,000 years ago, but at least one other hominin species had already been there for at least a million years. We’re just not sure exactly who they were, when they arrived, or how.

“Precisely when hominins first crossed to Sulawesi remains an open question, as does the taxonomic affinity of the colonizing population,” the authors note. 

That’s why the handful of stone tools the team recently unearthed at Calio matter: They’re another piece of that puzzle, albeit a small one. Every slightly older date is one step closer to the first hominin tools, bones, or footprints in these islands, and another pin on the map of who was where and when.

And that map is accumulating quite a lot of pins, representing an ever-increasing number of species. Once the first hominins made it across the Makassar Strait, they found themselves in isolated groups on islands cut off from the mainland—and each other—so the hominin family tree started branching very quickly. On at least two islands, Flores and Luzon, those original hominin settlers eventually gave rise to local species, Homo floresiensis and Homo luzonensis. And University of Wollongong paleoanthropologist Richard Roberts, a co-discoverer of Homo floresiensis, thinks there are probably more isolated island hominin species.

In 2019, when Homo luzonensis was first described, Roberts told Ars, “These new fossils, and the assignation of them to a new species (Homo luzonensis), fulfills one of the predictions Mike Morwood and others (myself included) made when we first reported (15 years ago!) the discovery of Homo floresiensis: that other unknown species of hominins would be found in the islands of Southeast Asia.”

Both Homo floresiensis (the original “Hobbits”) and Homo luzonensis were short, clocking in at just over a meter tall. Their bones and teeth are different enough from each other to set them apart as a unique species, but they have enough in common that they probably share a common ancestor—one they don’t share with us. They’re more like our distant cousins, and the islands of Wallacea may have been home to many other such cousins, if Roberts and his colleagues are correct. 

Complicated family history

But who was the common ancestor of all these hominin cousins? That’s where things get complicated (as if they weren’t already). Most paleoanthropologists lean toward Homo erectus, but there’s a chance—along with some tantalizing hints, and no direct evidence—that much more ancient human relatives called Australopithecines may have made the journey a million (or two) years before Homo erectus.

Finger and toe bones from Homo luzonensis are curved, as if they spent as much of their lives climbing trees as walking. That’s more like Australopithecines than any member of our genus Homo. But their teeth are smaller and shaped more like ours. Anthropologists call this mix of features a mosaic, and it can make it tough to figure out how hominin species are related. That’s part of why the question of when the ancestors of the Hobbits arrived on their respective islands is so important.

We don’t know the answer yet, but we do know that someone was making stone tools on Flores by 1.02 million years ago. Those toolmakers may have been Homo erectus, Australopithecines, or something already recognizable as tiny Homo floresiensis. The Hobbits (or their ancestors) were distinctly “Hobbity” by around 700,000 years ago; fossil teeth and bones from a handful of hominins at a site called Mata Menge make that clear. The Hobbits discovered at Liang Bua Cave on Flores date to somewhere between 50,000 and 100,000 years ago.

Meanwhile, 2,800 kilometers away on the island of Luzon, the oldest stone tools, along with their obvious cut marks left behind on animal bones, date back to 700,000 years ago. That’s as old as the Mata Menge Hobbits on Flores. The oldest Homo luzonensis fossils are between 50,000 and 67,000 years old. It’s entirely possible that older evidence, of the island’s original settlers and of Homo luzonensis, may eventually be found, but until then, we’re left with a lot of blank space and a lot of questions.

And now we know that the oldest traces of hominin presence on Sulawesi is at least 1.04 million years old. But might Sulawesi have its own diminutive hominins?

So are there more Hobbits out there?

“Sulawesi is a wild card—it’s like a mini-continent in itself,” said Brumm. “If hominins were cut off on this huge and ecologically rich island for a million years, would they have undergone the same evolutionary changes as the Flores hobbits? Or would something totally different have happened?”

A phenomenon called island dwarfism played a role in Homo floresiensis‘ evolution; species that live in relative isolation on small islands tend to evolve into either much larger or much smaller versions of their ancestors (which is why the Hobbits shared their island home with pygmy elephants and giant moas). But how small does an island need to be before island dwarfism kicks in? Sulawesi is about 12 times as large as Flores, for example. So what might the descendants of the Calio toolmakers have looked like by 100,000 years ago?

That’s something that we’ll only know if archaeologists on Sulawesi, like Hakim and his team, find fossil remains of those hominins.

Seafarers or tsunami survivors?

Understanding exactly when hominins first set foot on the island of Sulawesi might eventually help us figure out how they got there. These islands are thousands of kilometers from the Southeast Asian mainland and from each other, so getting there would have meant crossing vast stretches of deep, open ocean.

Archaeologists haven’t found any evidence that anyone who came before our species built boats or rafts, although those watercraft would have been made of materials that tend to decay pretty quickly, so even scraps of ancient wood and rope are extremely rare and lucky finds. But some ancient hominins did have a decent grasp of all the basic skills they’d need for at least a simple raft: woodworking and rope-making. 

Another possibility is that hominins living on the coast of mainland Southeast Asia could have been swept out to sea by a tsunami, and some of them could have been lucky enough to survive the misadventure and wash ashore someplace like Sulawesi, Flores, or Luzon (RIP to any others). But for that scenario to work, enough hominins would have had to reach each island to create a lasting population, and it probably had to happen more than once to end up with hominin groups on at least three distant islands.

Either way, it’s no small feat, even for a Hobbit with small feet.

Nature, 2025 DOI: 10.1038/s41586-025-09348-6 (About DOIs).